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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001743 Open in IMG/M |
| Scaffold ID | JGI24515J20084_1000285 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-38 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4036 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.9853 | Long. (o) | -145.0838 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F002744 | Metagenome / Metatranscriptome | 533 | Y |
| F003616 | Metagenome | 477 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24515J20084_10002851 | F003616 | GAGG | LIWSEKLGHEIGSYDSLGALKILPKPFIQSTTNTTVTCRICKGIGLNTIMYPNAPLLNKCVLCKGEKRRSNRI* |
| JGI24515J20084_10002855 | F000730 | AGG | MATEFIPSELIPIIWFICISVTGYVFFRVFSSTLKEKFRLSNLSKKKSEASGNTDGQVDSLIDNAPRMLAEVNKIVAEQKSAGVPDEQMKGILQKKQLLELVSNNAEVINIIGKPVIKKLLSFVRAF* |
| JGI24515J20084_10002856 | F000704 | AGGTGG | MPHDTGEIQPSKIKSVSVYDTASYGKDLFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAVYSDTDTGVVLNEGNDTAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNNRLLYENTFQSGAANLTGTGTSLHIFQQDVIETILVRKGNPIDILVELITVTTGTNTRQEGLVTLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKSRVSSLGQGN* |
| JGI24515J20084_10002857 | F002744 | N/A | VANTVAPIMGCTVIYDTDTPSGAEQFYTRPSTVTAGATAVNTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAIQPTYTGLGSAANAITGGDGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |