Scaffold JGI24515J20084_1000278

Overview

Basic Information

• Taxon OID: 3300001743
• Scaffold ID: JGI24515J20084_1000278
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4091
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017252	Metagenome	242	Y
F042643	Metagenome	158	Y
F075462	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24515J20084_100027810	F075462	N/A	MSIFDPNAVTKPERERRLKSAQKETKVAKTISIPISYWALLDQVRNKLGKKNANETIMYCVKQIGIEEGLES*
JGI24515J20084_10002784	F042643	N/A	MAFKLKTGKTVNKILAGAGVVTLLGLVGNMVAPGFMNSTMGKAVEGIAAYSVGGVESVVGAAATMFGGGRTTSTALDNTLTESL*
JGI24515J20084_10002786	F017252	N/A	MPQVIQGYHVNVKPSDTTAESTMVADIILAGTTQTIHYPTQYRAYAISAAIKNQDALNRCSFSINGQPAIQLSAGADQNINNQSIVSIQIVAGAAGTTDILAQVSPIYISTEAERFNQARG*