Basic Information | |
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Taxon OID | 3300001743 Open in IMG/M |
Scaffold ID | JGI24515J20084_1000228 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-38 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4416 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.9853 | Long. (o) | -145.0838 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000704 | Metagenome | 928 | Y |
F001922 | Metagenome | 617 | Y |
F003616 | Metagenome | 477 | Y |
F013646 | Metagenome / Metatranscriptome | 269 | N |
F014859 | Metagenome | 259 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24515J20084_10002281 | F013646 | N/A | ISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN* |
JGI24515J20084_10002282 | F000704 | AGGTGG | MPHETRDIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPIDTYPRVFSDTDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNARLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDIQLDLVTVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPALSHADGVFKYSKQRVSNLGQ* |
JGI24515J20084_10002283 | F014859 | GAG | LVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKARITHTTRKNKTVDVEETGNQIDNLINNAPRILDEVNKEIAAQREQGVTDQQMKGLLQKKQLLELGTSIPPEVYNIVAKPVIKKLIGFIGKI* |
JGI24515J20084_10002284 | F001922 | GGA | MVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATISGGIWLNSLGSFFNLKFPSTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDRMLKENKKNPNVTTLAVFSVIALGLSLITFPTIIQKLKERRILNA* |
JGI24515J20084_10002287 | F003616 | AGGAG | MIWSEKLGKEIGTYNSLGGLRINPKPFIHSTTNTIVTCRICKGAGCNAITHPNGLVTLNPCVLCKGAKRRTNRIG* |
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