Scaffold JGI24673J20094_10004151

Overview

Basic Information

• Taxon OID: 3300001742
• Scaffold ID: JGI24673J20094_10004151
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013063	Metagenome	274	Y
F086614	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24673J20094_100041513	F086614	N/A	VGQAFHTLPEGPTVYGITSLAGEIYLLRNKERDQVEVYDVISCRLQRCLTVPNCKVIMDMTSCEHNHCVYISDHGIECIHRLGVQGAATR*
JGI24673J20094_100041514	F013063	N/A	VLVVCPRVRKIKEFSSQGKLLRELTLPGEAVQPWHAIQLTNGQFVVCHGKHDDPLNRVCISADGRHIVHSHGGQPGSDTGQYDVPFHLAVDNNEFVFVADRRNRRVTLLSPTVHYVRQVVLSDKLKWRPSRLYLDIQNRLLYVTDNDDKDTIGRVVVFSV*