Scaffold JGI24658J20074_1007612

Overview

Basic Information

• Taxon OID: 3300001739
• Scaffold ID: JGI24658J20074_1007612
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1189
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0693
  • Long. (^o): -99.2557

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003635	Metagenome / Metatranscriptome	476	Y
F040337	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24658J20074_10076123	F040337	AGG	MKELKPNTLWLVIKHVHYESSSFTDDYSVPKATKNKGQADQYLHSLNMLNESKNTSYFLVSVPNE*
JGI24658J20074_10076124	F003635	GGA	MCVKIMENKRGKNMNEKNTDHLLKLIDSLIKLVGKNTDHINKLADEIAELKKGNK*