Scaffold JGI24658J20074_1004196

Overview

Basic Information

• Taxon OID: 3300001739
• Scaffold ID: JGI24658J20074_1004196
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0693
  • Long. (^o): -99.2557

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018940	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24658J20074_10041965	F018940	AGGAG	MTSYENNDADFHYENSGASHEEQQHDENCDWIYDNCTCGIGEAENYDTPDDGDW*