NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24659J20068_1008720

Scaffold JGI24659J20068_1008720


Overview

Basic Information
Taxon OID3300001736 Open in IMG/M
Scaffold IDJGI24659J20068_1008720 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)17.4274Long. (o)-59.8286Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061287Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
JGI24659J20068_10087202F061287AGGAMMDKNDREVMIEQLMKLKLERKILDVMRDTEIRRLFSILKRYVK*

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