NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24520J20079_1011673

Scaffold JGI24520J20079_1011673


Overview

Basic Information
Taxon OID3300001735 Open in IMG/M
Scaffold IDJGI24520J20079_1011673 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-45
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0454Long. (o)-144.8791Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028194Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
JGI24520J20079_10116732F028194AGGAGMRPEKKEIEERKKELRKQHDDLLAKINEGKQAIKNMETNLIGLQGAIQQCNWTLELFKEEKKK*

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