Scaffold JGI24520J20079_1007642

Overview

Basic Information

• Taxon OID: 3300001735
• Scaffold ID: JGI24520J20079_1007642
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 629
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina → unclassified Nitrospina → Nitrospina sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24520J20079_10076421	F105323	N/A	MKLKSKSSLFHTIIERVDQQLASIPLNDAEGTPLEDSTDFDMHVDGIKEMKITDAKENVIRPFSTAVATQLVYDELTERREQSNG*