Scaffold JGI24520J20079_1004486

Overview

Basic Information

• Taxon OID: 3300001735
• Scaffold ID: JGI24520J20079_1004486
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 829
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F064794	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24520J20079_10044861	F064794	N/A	MKETLLKLTKKITTWHEGMFKYITLKSKTSIFFTWLLVFICLYE
JGI24520J20079_10044862	F009536	N/A	MVMKQALDLMSGTLKKEIKNNLENPKSYTRIFVKICEEIDSMKVKIPKFTTLKNDILKINKETHSKITEQIKYSIPEAQSTLSVKDIERWLERAKKNDQLVYYTGRTLDHPKSVKEEAVFRKARNLAMDYDNVPFKNKKYQYRGSIRGEWGCNYKDIITLVQKKVANLQRDMVWDEEKKSYIPGNIISYPIYNYIMIKT*