Scaffold JGI24520J20079_1002292

Overview

Basic Information

• Taxon OID: 3300001735
• Scaffold ID: JGI24520J20079_1002292
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1194
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003936	Metagenome / Metatranscriptome	461	Y
F014628	Metagenome	261	Y
F099431	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24520J20079_10022922	F003936	AGG	MIETFNIFWSSPIELRVILLAIPIMFGWFFWREKKRKQKEKHQARLNSVKTKI*
JGI24520J20079_10022923	F099431	GAG	MKALKKDTLKNGDVFKISFLPRGDDDVPRHQWQTSFRKAQWITNDPKQNCFTAKCKTKAHSYLKFLDVMQKGIRTASTEFASVFVNINGESYEYKGEDDRNI*
JGI24520J20079_10022924	F014628	N/A	YQKWEVRKTYEVEMLYEIVAKTXXDAENLLEKEECIKLEEVDGYGKTFLETITGKHSNDMSGDEPTTWTKVEECIPSEDTDSDNDFKPFLNYEDTTWSKDDFEWLKKEDGTDIKKK*