Scaffold JGI24655J20075_1017504

Overview

Basic Information

• Taxon OID: 3300001733
• Scaffold ID: JGI24655J20075_1017504
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 721
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 15.9164
  • Long. (^o): -124.5211

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F027534	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24655J20075_10175041	F001712	N/A	LSQITGTDMSLSAGQPLGSRAQNFINSLSGRITGFIPFKSAAGASIPQTISIDGMFNKWSGIGLGTLIYSMVPIKMLPHKGKAKTLGKSLLTGGILGGLFSVGNPHNTNLIAPSRAITVSSSEVSYT*
JGI24655J20075_10175042	F027534	GAGG	MTYGYDDATFTAMSGVTEVQINSGTSLTAPDPAHGLLAVIPYLGELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVQAPALLAYPLDVPLNGGEHINYYGQ