Scaffold JGI24655J20075_1003953

Overview

Basic Information

• Taxon OID: 3300001733
• Scaffold ID: JGI24655J20075_1003953
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 15.9164
  • Long. (^o): -124.5211

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003410	Metagenome / Metatranscriptome	488	Y
F018195	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24655J20075_10039531	F018195	GAGG	MYKAICDNCNGNGHINITNSKGVIESKQCWMCNSEGEIKYEEDFINKLITNHHHRLH*
JGI24655J20075_10039535	F003410	GAG	MFLATGALITFTADHRTNPDCFTKGYEVLEKIATYHGPGPEQGWVLNDSNVQVGGWYCK*