NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24514J20073_1004090

Scaffold JGI24514J20073_1004090


Overview

Basic Information
Taxon OID3300001731 Open in IMG/M
Scaffold IDJGI24514J20073_1004090 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F002506Metagenome553Y

Sequences

Protein IDFamilyRBSSequence
JGI24514J20073_10040903F002506AGGAGMTNEVTTTKQTSVSNVDISPVISEVIEYVKDQAVMKDIKTVLASVPKSDSMDWKLVSGVIMNSIVEWVVENKDNGDVNSIDLIKHLQKDVGYLLQRLGLAQ*
JGI24514J20073_10040904F000782AGGAGMTKHGFKDLVKNGFFSLRWLKNDGEEGYIHRGILGTNKRIDGEHKEHNDYVLVYKVGNGYGEGRRWANVNPNTITHVNSYPQ*

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