Scaffold JGI24514J20073_1003292

Overview

Basic Information

• Taxon OID: 3300001731
• Scaffold ID: JGI24514J20073_1003292
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2355
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017655	Metagenome / Metatranscriptome	239	Y
F017843	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24514J20073_10032922	F017655	N/A	MSNGNPFSKSISLGHIIATIGIVIAGFTFIYDLREAISILQFKGDTVEQRLDRIVNRTDSQFDQIMDHLVRLEEKIDTLKEDN*
JGI24514J20073_10032923	F017843	AGGA	MKKLLFALLVLPMSLFAADFDRIGVDVSGSNDQGVHFGIANSGSLSLGLAGEGYTFTFNQAGNAMAVSAYGVELSRSNSKKIGVGYGAGIGILDGGVHYNWMSSGDHVIGGATTLTVGGVGLETSADWNLSASDITGKVGTSLDLWGAQASVVSNWDIDDLSYDGLELGAGYAIPVADGIHITPSIGMDFDSDWGRGDANASVAINLSFGSNGIPAS*