Scaffold JGI24514J20073_1001440

Overview

Basic Information

• Taxon OID: 3300001731
• Scaffold ID: JGI24514J20073_1001440
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4164
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F042643	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24514J20073_10014402	F017252	N/A	MPQVIQGYHVNVKPNDTTAESTFVSDVVAAGAGATTIQYPSQYRCYAISVAIKNQDGTNPCTFSVNGQPAITLSAGADQNINNQSIVSIQVTPGAAGTTDILAQVTPIYVSTEAQRFRTERG*
JGI24514J20073_10014404	F042643	N/A	MTFKFKTGKTVNKILAGAGVVTLLGLVGNMVAPGFMNSTMGKAVEGITAYSVGGVESVVGAAATMFAGGRTTSTALDNTLTESL*
JGI24514J20073_10014407	F002667	N/A	VEIEILYASLILVACISAGISCIYISRSRTVINKHSRQRIKDFENDIEYLAQSKKDGDKQHREDIRNLQQALNRSKRGETVTDSDMKDSGLGEVIMQLIPKKYQKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTANSKQAQPGTETQEIQTL*