Scaffold JGI24660J20065_1007428

Overview

Basic Information

• Taxon OID: 3300001730
• Scaffold ID: JGI24660J20065_1007428
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1245
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.3272
  • Long. (^o): -52.639

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105356	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24660J20065_10074281	F105356	AGGAG	MVLGVWLPGERYRIYEPGNGREITVHIPGADSIYDVDELDEICHWQREEAEKEWQSKEEKLPLTRSQQHDLGGTLVEIRASKEFKKENLHGRYW*