Scaffold JGI24521J20086_1003044

Overview

Basic Information

• Taxon OID: 3300001728
• Scaffold ID: JGI24521J20086_1003044
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1835
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014628	Metagenome	261	Y
F035483	Metagenome	172	N
F099431	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24521J20086_10030441	F035483	N/A	TFFNNKASSIVSYSKAKEYKFDRDEKNSISVKDCISQLEKWAEKQAEQYAETTEQGKRLSYLKALQTKAKDLVAEASVSDDLKSSLDNLFAFVGVSWEQKLPALPSPKK*
JGI24521J20086_10030442	F014628	GAGG	MKMTKEEIESKFPPIINGTYKKDNPDKEIGYQKWEIRKTHEVVMLYTITAKTKKEAEDILERKECIKVEDVDDYGDTFREKIDGKHINDFSGDEEAIWKKVXECIPSEDTDGDNEFKPFINYEDATWSADGYEWLKKEDGTNIEKK*
JGI24521J20086_10030443	F099431	GAG	MKQLKKDTLKNGDVFNISFLPRGDDAVSTTQWQTSFRKAKWITDNPNQNCFTAKCKNKAHSYLKFWDMTKDAIRTASTEFASVFVNINGESYEYRGEDD*