Scaffold JGI24521J20086_1002458

Overview

Basic Information

• Taxon OID: 3300001728
• Scaffold ID: JGI24521J20086_1002458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2162
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24521J20086_10024581	F009536	N/A	TRLFVKISEEIDSMKVKLPVFTTLKNDILEINKKTHSKITEEIKYSVPQAQSTLSVKDIERWLERAKKNDQLIYYTGRTLDHPKSVKEESVFRKARNLAMEYDNVPFKNKKYQYRGSVRGEWGCTYKNIITLVQKKVANLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI*
JGI24521J20086_10024583	F013896	GGTGG	MICDKCNGNGFTLVKGETVQCKKCLSSGELPETLQPPKYPEEDLADIYQTLYTESLKLSETHDPGMVAASLMAIGSRIYKTILTTEDYDRIMERILKTDVEPFKKETLQ*
JGI24521J20086_10024584	F080498	N/A	MIKKIIVYHLLLFFVVLLFACAPRMHVAPKPTEKDNKFMVQLLRNIITQGMDF*
JGI24521J20086_10024585	F045144	GGA	LSWSKGLYYHINRTGKTIRKYPEGNDPLKQKLFGKTRQCTKCGKRKSTLQFHWKTDYRYKDKVTKRLQRHCGVCRVTQDNEKYSATAEAYLKRRIGTLKSTCHKHRGRKKVLLTSDQFYNVWKKQRDKTGLQCPLSGETMTHVLGRGQVLTNISVDRIDSDKDYIKSNIQFVCLMANLMKHKYDNKNLLNWSKKIVNNLERK*