NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24521J20086_1002458

Scaffold JGI24521J20086_1002458


Overview

Basic Information
Taxon OID3300001728 Open in IMG/M
Scaffold IDJGI24521J20086_1002458 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2162
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9991Long. (o)-144.9989Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F045144Metagenome / Metatranscriptome153Y
F080498Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
JGI24521J20086_10024581F009536N/ATRLFVKISEEIDSMKVKLPVFTTLKNDILEINKKTHSKITEEIKYSVPQAQSTLSVKDIERWLERAKKNDQLIYYTGRTLDHPKSVKEESVFRKARNLAMEYDNVPFKNKKYQYRGSVRGEWGCTYKNIITLVQKKVANLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI*
JGI24521J20086_10024583F013896GGTGGMICDKCNGNGFTLVKGETVQCKKCLSSGELPETLQPPKYPEEDLADIYQTLYTESLKLSETHDPGMVAASLMAIGSRIYKTILTTEDYDRIMERILKTDVEPFKKETLQ*
JGI24521J20086_10024584F080498N/AMIKKIIVYHLLLFFVVLLFACAPRMHVAPKPTEKDNKFMVQLLRNIITQGMDF*
JGI24521J20086_10024585F045144GGALSWSKGLYYHINRTGKTIRKYPEGNDPLKQKLFGKTRQCTKCGKRKSTLQFHWKTDYRYKDKVTKRLQRHCGVCRVTQDNEKYSATAEAYLKRRIGTLKSTCHKHRGRKKVLLTSDQFYNVWKKQRDKTGLQCPLSGETMTHVLGRGQVLTNISVDRIDSDKDYIKSNIQFVCLMANLMKHKYDNKNLLNWSKKIVNNLERK*

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