Scaffold JGI24521J20086_1000603

Overview

Basic Information

• Taxon OID: 3300001728
• Scaffold ID: JGI24521J20086_1000603
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8634
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023219	Metagenome	211	Y
F063084	Metagenome	130	N
F065136	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24521J20086_100060310	F023219	GAGG	MVGDHGIMVPHHFPLTKGNSMLSSITNIVRSNQNAVMVRVGSSSQSVYTIFDLKAGTNSFTGSLAGAKSAWNRNYKNSRQFVAKGNHRYLTA*
JGI24521J20086_100060313	F063084	GGAG	MTLLDLTLEAMIQECAALGIDTIEHAETILDMYHDGFTSYEVMEMVEVIQDRDHYAYIPEL*
JGI24521J20086_10006037	F065136	N/A	MNNSIRITRQGGVQYTFENGYTLSIGCGVGHYSSNQDKEDSSGACTEVEVAVMNPAGGFVALEYDVAGWVKASVIPSLFRAVEAKDWEHIALLCGQDEYNHSENRRDLDPTSDQSQAGGYYAELDQYA*