Scaffold JGI24529J20061_100156

Overview

Basic Information

• Taxon OID: 3300001727
• Scaffold ID: JGI24529J20061_100156
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2553
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029465	Metagenome	188	Y
F046314	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24529J20061_1001565	F029465	GGA	MSLYNRLVKEKERLGKKALRFPKTDKELLDRKRWERIYGILTRRYEYGIEDVMDSYKRQDQLDEIATIKRP*
JGI24529J20061_1001567	F046314	GGA	MAIETRKEKMDHMFALMEEVRVLVGRLEEHPEIPAAVRTLNYRVDEIRKELSLNKYELEKEQGIDTMFNMKRENPYNEGSGGDD*