Scaffold JGI24529J20061_100089

Overview

Basic Information

• Taxon OID: 3300001727
• Scaffold ID: JGI24529J20061_100089
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3115
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035492	Metagenome	172	N
F071659	Metagenome	122	Y
F090889	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24529J20061_1000892	F035492	AGGAG	MADVGSILESKESQDSWYDPKKDFSGPMPEGEYKAHVKALNIKRXIVVKGKFLSDIYEVTFTVADENKDMEYQNDKGESXSGSAFVGRDFRSKGFFRFKKPNKSEYPNLSENMGSNRSYMELVNSFGLKMEEVDGKFYLPELDSSDIEGLPVIAKLYHDTWTDGDGEDRITPRASMIFDWEDGEKKEEELPF*
JGI24529J20061_1000894	F090889	GGA	MSNLKFKELEESEPLLKRVRIEKSESMTXKDVEDFCDWVCAKATRLGFDVREINEDKRLG
JGI24529J20061_1000895	F071659	GAG	MKIKDWVKIEDSMTDLMGWDAGIDAMCEAHREVAPKKPIYELSKREDKKLIFRLRKRYSKYKEGSN*