Scaffold JGI24662J20072_1017947

Overview

Basic Information

• Taxon OID: 3300001724
• Scaffold ID: JGI24662J20072_1017947
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-146
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 607
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 37.133
  • Long. (^o): -17.5322

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054156	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24662J20072_10179472	F054156	AGG	MLEALLFTGQIPEIDWEHGDDLCDCTFQRIGYWTNPYLARTLKVRLCCAWKVLAEQNPEIAALMQEIPAYDDYNGKRWVSEPAAWDSKEADMPRALWHRQLSIQQDKPLEQVRREY