Scaffold JGI24513J20088_1005925

Overview

Basic Information

• Taxon OID: 3300001720
• Scaffold ID: JGI24513J20088_1005925
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1682
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007666	Metagenome / Metatranscriptome	347	Y
F020444	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24513J20088_10059251	F007666	N/A	FAKKLGIEKLLKKVEIASKKYHDFKQTMEHTESQLYRASEDVADELARKLNHFDKARKWETGFNGFKTKEDTVNYFTAKLDEVCYEEAKKHIQKNHAIYNQLQDMQDNCKLVVHTGADINNTVKALQKEMSKASIKLPIPEQLLQIAIN*
JGI24513J20088_10059254	F020444	GGA	MKKRIRHNDLLPWFLEDHGTLPAAYVASCQRFFLELDRRQADKQQATSAKLQAPSLTDGEG*