Scaffold JGI24513J20088_1002965

Overview

Basic Information

• Taxon OID: 3300001720
• Scaffold ID: JGI24513J20088_1002965
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2480
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033251	Metagenome	178	N
F058450	Metagenome	135	N
F067196	Metagenome	126	N
F069345	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24513J20088_10029652	F058450	AGGGGG	MIRLTDIARRKSLAVILGERTGQDIHYSEVCADDKYVYRHNSDYPDEVELYEIPLPMCGEVEGIIHYVESPFVDPNNFSRDSQRGVRGFSHEV*
JGI24513J20088_10029654	F069345	GAG	MILFTFLTKQKMMVDCPECSHSDRKGEVEXEQFEMTSYGVYEPXGVWKTCENCSGSGEIEAD*
JGI24513J20088_10029655	F033251	AGAAGG	MADKKKRNLTSKKRAALRWTGKEIDQLLEYKATGFKDREIGELLGRSTKAVNVKLGKLRRSVDAASNPDVELTSFQNNLDETLFGGVSPDNKPKKPRKPRATKLSLTPQPLVTDAFNVPKKPVYAAVVLGLVIVAWYLGSMS*
JGI24513J20088_10029657	F067196	GAGG	MPKFNNIEEKQKFFLMALRKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDVKGFVDFALKEKSQFDSARQAVEDADNMLDAITSSKDK*