Scaffold JGI24513J20088_1000207

Overview

Basic Information

• Taxon OID: 3300001720
• Scaffold ID: JGI24513J20088_1000207
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9849
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092352	Metagenome / Metatranscriptome	107	N
F094097	Metagenome / Metatranscriptome	106	N
F095740	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24513J20088_100020711	F094097	N/A	MTKLYKQGKTDIDRLSNTSLTTIIREIPEAKAVKTAVSAAMYSVCNLYHDVDVEALSGMMDGFYREFQYEPLSVFIDVINDFKTGKVKVFGRITPNQIRESIMDKQLKIAIERENAHLDRKGDVGTRSTLTLREALAKVTTQK*
JGI24513J20088_100020718	F092352	N/A	MNIIATTLKSIIEGQGLTYLRAANPNDLNELVGSYDLSNGVGVYANLPTVTNITYGQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSE
JGI24513J20088_10002072	F095740	N/A	MEEWLTEHWATLLAALGLGGGGSVVGHKMVDKIQNKKIEKLEIKVSEIDSNIKLNDGVDKQFRASVETRLSSIETSLSTLTNHLLNKKK*