Scaffold JGI24513J20088_1000028

Overview

Basic Information

• Taxon OID: 3300001720
• Scaffold ID: JGI24513J20088_1000028
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35963
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.37%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094420	Metagenome / Metatranscriptome	106	Y
F096047	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24513J20088_100002836	F094420	N/A	MDWMDEVLDGQPLEAEMWKIGYIENLLHYTAIPSSEQTEILNSLDILSDIDADKIIRYIKENEVYSDPKHQYEAMRKNGMFNEKEY*
JGI24513J20088_100002847	F096047	GGA	VSSPIYRVIIEYGYRKKGSVRHYKYKRIDTFVLTNDIEMIKKDANLNSRIIRQLKSGNKEMDIMFKSIYIEGQYGDTNY*