Scaffold JGI24654J20067_1004947

Overview

Basic Information

• Taxon OID: 3300001719
• Scaffold ID: JGI24654J20067_1004947
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-109
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1543
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.064
  • Long. (^o): -133.3152

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F056907	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24654J20067_10049473	F056907	N/A	MSGNAYYIPGDTGVGIKLPIGEYEAIITSLGVVDNVKCGKFIADIFKPGYKIQHRDYPSTDVKDNGIFRYKEKVGYEFKPSRNWGFAKFCGILGLEQKDGDKIALPYLKFDMIDGLRVVVEINYKNFVNESGNPVRYPVGTLKKKIGDVPF*
JGI24654J20067_10049474	F021867	GAGG	MDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDMEDEPAEEKQQSKLMSRLECKQVIETESEGSKAFVKAMVHIDASGLQDDDLEKVLQALKTGKITMDNLQASLDKIYSIKQSYK*