Scaffold JGI24523J20078_1028654

Overview

Basic Information

• Taxon OID: 3300001718
• Scaffold ID: JGI24523J20078_1028654
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F056072	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24523J20078_10286541	F020716	N/A	RYCVNCGKKYYPKSNYSYPDFNWGTSDEDKLAYARFHSLGCQSVWLNNNKEAFAHLVDNISHNVIQDNSNIEKG*
JGI24523J20078_10286542	F056072	AGGA	MEANKLRLNQQKRQLLKREWASTVWNKTPMEVEDNLRLAIDNYRTVKQQTWDNVITPILDSKFPIDDMNILAKYDRGDNHYRSFTEIDQCFYFKPKHTDSSEAQYKWTIDDKEMKALYHFELQDKGHQATLEVEYDET