NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24523J20078_1018238

Scaffold JGI24523J20078_1018238


Overview

Basic Information
Taxon OID3300001718 Open in IMG/M
Scaffold IDJGI24523J20078_1018238 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9964Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009561Metagenome / Metatranscriptome316N
F027854Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
JGI24523J20078_10182381F027854N/ALHELIDELRAKLKKSLQEILQLRKDLDLEREEHQLTQLRYENVKNAINKQVDRLNQRRPDVEIPADEKGIK*
JGI24523J20078_10182382F009561AGGAMTELKDEHXEVISKNKARKHELDKMVEQLSDAKESVAVLSNAIECGFLHDKHSLILQEWIVEYEQLSEQLDTHLTEVRDHG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.