Scaffold JGI24523J20078_1009250

Overview

Basic Information

• Taxon OID: 3300001718
• Scaffold ID: JGI24523J20078_1009250
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F036003	Metagenome	171	N
F062259	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24523J20078_10092501	F062259	N/A	KELDIEVREAFDRAVDSIMFDYMYMGTEKGDDLEYMMFKHIETREYIKIPKCGVAFKKRKEIV*
JGI24523J20078_10092502	F036003	AGGAG	MNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRNKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDSVTDLEPITVEEVERAYNELR*
JGI24523J20078_10092504	F012529	AGGAG	MIQDKTYKIKVADYHDAVIYVYERHVKCLNPKDKPEDHKWKHWKEVAAVIPVTHDDCDDYQDKSGNFHNNVRVVVDALTELYGSSSDYEMGVCYTMNTHQYINV*