Scaffold JGI24159J19872_10078018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24159J19872_10078018

Scaffold JGI24159J19872_10078018

Overview

Basic Information
Taxon OID	3300001689 Open in IMG/M
Scaffold ID	JGI24159J19872_10078018 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2637
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080614	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24159J19872_100780181	F080614	GAG	LKHGNGKHLEYSXXXXVKMHRTSKPVVFNQLFHAATHFGNQFNLTTPFRKFPVRHMKCSCVCTIENHNDYKITDDFTVLNKDSFVKFMHMAASVRETRGSQITPQDSSLNTDDSKLFAAAIRYLIYKHITFLRHKVIRALPNATVFCTVVVIITL

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