Scaffold JGI24159J19872_10020697

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24159J19872_10020697

Scaffold JGI24159J19872_10020697

Overview

Basic Information
Taxon OID	3300001689 Open in IMG/M
Scaffold ID	JGI24159J19872_10020697 Open in IMG/M
Source Dataset Name	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8188
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location Name	Key West, Florida, United States
Coordinates	Lat. (^o)	24.5512	Long. (^o)	-81.8083	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031693	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24159J19872_100206971	F031693	AGCAG	MRALLSLQNGARLQASTSLSTCSFCESILFVHLKALRGGELRLVRTVGMVRLDEIL*

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