Scaffold WOR8_10026946

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10026946
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5362
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F004376	Metagenome / Metatranscriptome	441	Y
F098219	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1002694610	F001086	AGGAGG	MADKCTGWAIVATMERPNKTWYTETITDIDDSTASIVDDFLTEYCEQKEEEKNDTTNK*
WOR8_1002694611	F098219	GGAGG	MARPYLILKRYNIINKGTDYKLENVTDKHCPSCNELLFNEIHQPEIDYPYVCLYCDENFYNIELKDNNSLSDVDRLHLMVQGGKYGG*
WOR8_1002694612	F004376	GAGG	MKCLECGFDEGTLLKEFNPDKNYTWYELSEMTEICASCGSENIETTEEKNG*