Scaffold WOR8_10023656

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10023656
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5760
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1002365611	F002867	AGG	MSVISTTDYGNGFVIDQLENERGELYYRACTGSICRYAEDQYIAVMYLENMGWDPTQQVPQ*
WOR8_100236562	F004722	GAG	MSRARTGRELVMEWLQREIRQAKTADLQRAAAFLEWARNIRKGCSKQRGGARVAQSNAWRKRVDEDVRW*
WOR8_100236564	F006109	AGTAG	MTRYVVMVEDRWVTAVYDSGKGIGFTQSQEDASSWVTYERAIAAARTVAQSCNCHAAVHSVDEPAYPQSWK*
WOR8_100236565	F017122	N/A	MEVTPFQEQLNPELRLGEGRSRTCSANAMLFELKIWLPGQGAMRDLVRAESLQQAIQFAQNRYPNCKIEVPSTAAKKPKLVRSTRGPKERARQNLRLLEGKREQNDR*
WOR8_100236566	F043896	GGAGG	VSRTIADWARQSWGEVIVNQARADLLDKLYFWDGRDKKGHPLHGTYTGLYQQYTAN*
WOR8_100236567	F003805	N/A	MRPIEHTTESCFHKAAQDQWLVDLFNRQDYRALLEAALVLNTLHQLERTKAAWAIREAANNLAEQFGLDRDSA*