Scaffold WOR8_10022605

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10022605
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5908
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F029405	Metagenome / Metatranscriptome	188	Y
F056536	Metagenome	137	N
F105068	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
WOR8_100226051	F105068	N/A	IMDILYFTLTTEDAIFQFQVNKAEDLVRVTKMILKAKCQGEWHRSTLMTVDAGRKLVRQLQAR*
WOR8_1002260510	F029405	N/A	MRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESNQSDWDGIEDISSAERNACDHYNERYVINDYHY*
WOR8_1002260512	F019817	N/A	MPATTLPALTINQRNLYTYFLNHSKKYGNTPCFVPKLPAQSSRLDQYLQALIKLEQYGLICVDRTSDNYTGWIMSKPRTE*
WOR8_1002260513	F007026	N/A	MSYPQVNWKKNEYHQLQEAVDLLKAILERESKRHQMDQDLVPGDDDVVQEAIGLLEEIIDYDPTPNELGEPPITLDEMHTAAWKEHQAMHS*
WOR8_1002260514	F001165	N/A	MSNSSTPRIPDSLDMQRLQAMQLVAKMKESADKHGIGFIGGFIAPNGEKFVMSNMDDEDTNALLPDNLK*
WOR8_1002260516	F001120	GGAG	MTKDKSPLNFDRTIAGFNITENGIKSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI*
WOR8_1002260517	F020342	N/A	MSAVTDNLNMFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLVKYSTYSYIDED*
WOR8_1002260518	F001807	N/A	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGYPD*
WOR8_100226053	F056536	GGTGG	MLSYYPYEGAKKRITWHGGESTMLHYQVEVDDYKGDPDWIDRYSQTLGGGIPCGTKELLAAMSDYYQYISTMELDTKAGTIF*
WOR8_100226054	F015587	N/A	MTALNLRKNIAALLVTTAAAVENAKLPNKEAARTKLNEYRLRAAALMMPNDMAFVITPNQDN*