Scaffold WOR8_10019621

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10019621
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8637
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036088	Metagenome / Metatranscriptome	170	Y
F083437	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1001962110	F083437	AGGAG	VSLNDICNDVANRMGFLVGQSRNILSSAQKKLKESTEALNLKKLPEKIRNAMYEKLSRMLYKQAEFMIGKISERMEAIDQVAKPFYEKVNALSAHGPVSETQLWHALNSIEAAKNLSEEEKALLVTIFGQFVGASKPKFVNATVVKEDSSANPKSKPRPDTITNC*
WOR8_100196213	F036088	GGAG	MGVIGLALLGVVLGAAGTEILRAKKPEAIEKIEDKARRFVDSVYPSKPDDEKAQK*