Scaffold WOR8_10012135

Basic Information
Taxon OID	3300001687 Open in IMG/M
Scaffold ID	WOR8_10012135 Open in IMG/M
Source Dataset Name	Deep Marine Sediments WOR-3-8_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001687 Open in IMG/M

Scaffold ID

WOR8_10012135 Open in IMG/M

Source Dataset Name

Deep Marine Sediments WOR-3-8_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9576
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9576

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F097211	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1001213513	F097211	GGCGG	VVSSGIAGGTATPGLSLIPSVNTSIPTDGTVVSGQFGVTIDGASSRIANGSTASVNIIDSSALSALGSETQWKLFATVASGAVNGVAQGSGVYDPRATAGKLSGKDKALAICEVCWIVPDEPPERQDVALQPDGLIESSVYTSTSPS*
WOR8_100121352	F023840	AGCAG	VKDEHGHIRVGLTLEDDFTLTRLKNAAHSLKGEARDQYLWKTIFKFICRERAYKSVMEEIGVIIDTNVSIFDDSGEQTD*
WOR8_100121354	F008401	N/A	MESARLLTIAQTAELLNCSAGFVRKRISLTESDQPGGWPKGIFVNLQPNGAKSLYRINKDALEAYLNSAEEEATVEESAACAV*
WOR8_100121357	F015724	GAG	MYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIKSVTQTSSTIYAVELSSNFGPPISFFTGEILSDRFAADGTEKTSYNNYVVVGVGNGTTPITPGFAPIFNSIFISLDTNNSWSVIDNETLAAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRRYPYTLPQDLKPGLYDAGKDYLSSRTENTRDFPGFTRDFGFLYVKKLLDLPTYTDGNKVYSDPSLIYFAPRWCKHIYASFWDMQNRFGSDMFPPAWLAQPTDEPMDDRYREQFDMNLAKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPAITPKLDGGTYSNGVLVSGASLIYDGGQYSNGVLIPYPLLPSLINGGTY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters