Scaffold WOR8_10011264

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10011264
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9055
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F030356	Metagenome	185	Y
F049577	Metagenome	146	Y
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1001126411	F049577	GGA	MSTTPEIRNGIIDQAQQQRIVKDTLILQKVNKVQREAFKSRFPGQLEHIMRLTAERLQAMLANKPEDLSNPETWTATAQEVRDLSEALFYLAQISKENPIEE*
WOR8_1001126412	F012328	AGGA	MKKNLTPPSTAKVDNPWDEAPTQEPTAEDIRAVAEQIAATAPQAPRALNALDFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEIDPKYIGNENPYIDKTELVPVEELKDAPARDKTLPERNQVQNLFVSNQIPHTDFESRMQDKKVSVIFRKYNSGEISYEILGPVDQRPHGVKLDKYGRERPEIIKWVDPRSGEQTVVRNDGTLTPQGRKLRALMQTFKVNNSNYWDVWIDREFISLSDNIQQNVWDLNT*
WOR8_100112644	F015856	AGG	MIDNNTIDFYNSRLTIDISQPSKLTTSQKDQVRHYGSLAEALLKNRDLAMFVHHFKFSLADELASIRSHGPEDNTRRIAISNELAGIDNFVNSLKRAVYYKNRLMQADMPGNAEAPGN*
WOR8_100112646	F030356	AGGA	MLNIKNIPVQDINQNVKTNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVITKGLMPNGEINFEFVAENEDDEVGARQATDMVSKVVNQMNDPHFILERWVMDANMHKNGMMMIKPVREQIVRYIETQGTADQLKAFELQAAEAGLTALRQSRRRISVDMEKVMEEVTVLMGEQKKEFAQGVIGQFMETLKAAPGEESMDSEDVLMSENISEQQDILNESIKRNTIYSAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEVTELYPGIDLKVFEQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRMVSVVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFDPAKDIYQMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQMALSPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDYGVKKLAQAVHPDKKAEFLDFLAWDDMNFCERKQIHLELALGMMSDENALGRLQIIQKCQNDLYQVTQTMVAAGTLTPEVYKKVKKPFADTLYVLGVKDCNVYLPSDEEVSAMIKQAQEAQKGKTPSPEDQKDMSVAELNKIKAQQIAAQIEGADPDTQLNYMSIAMGKSQDYGH*
WOR8_100112648	F079653	AGGA	MFICAIEQNTMILCEKHAQAFEAAALVAGTPHTVYELDEEDALEAKCHACDLQDELTRPRIILPD*