Scaffold WOR8_10007637

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold WOR8_10007637

Scaffold WOR8_10007637

Overview

Basic Information
Taxon OID	3300001687 Open in IMG/M
Scaffold ID	WOR8_10007637 Open in IMG/M
Source Dataset Name	Deep Marine Sediments WOR-3-8_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24782
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (61.76%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011939	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1000763716	F011939	N/A	MTVKLIEETLRKEVQKIDKSVRVVAVEQSKKKNFYRATLLKDGKSGSAELKKDVIKQFLSQEGRGKELRKALGKAVSHLSIRYKR*

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