Scaffold WOR8_10003852

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10003852
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20395
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048284	Metagenome	148	Y
F070060	Metagenome / Metatranscriptome	123	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1000385212	F070060	GAG	MSYVVVDESDFEVIGVDAYGILVKAAWGEQSFVSSWHLVDERKIQLTRRTKPADWDAKKQDKEQAVEG*
WOR8_1000385222	F048284	GGTGG	VFSKADYELAARILGLPVPETPAEMAAATPMTAQVVRQFGQALPPAPGMEGEGFYTGATRSLNAYPNNTAPMQKAQLAARLRTEPERPHEDAYLIQLLQSLEPEEYQIILALIQELAEQGEEESDRLSSQRPLEYDTPNLGSNYSVLNAPSSNAIEPSRAFQPLS*
WOR8_1000385234	F077254	N/A	MDPYARAAFDFSKAYLMNMRAADEQRRANKPSSDAFAQTVDAEETDYNYSPTPQEPAPPNEQYNGMEADDEVTADQTNGNALTRAKQKVSKYLQERD*