Scaffold WOR8_10001049

Overview

Basic Information

• Taxon OID: 3300001687
• Scaffold ID: WOR8_10001049
• Source Dataset Name: Deep Marine Sediments WOR-3-8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28156
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (61.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007248	Metagenome / Metatranscriptome	355	Y
F047656	Metagenome	149	N
F105091	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
WOR8_1000104930	F047656	N/A	MTIEQLKKLMKDLGASEETTSEGFTFIELCPQASKSCHPTGWPKGNPKWTKPQATSDDK*
WOR8_1000104931	F105091	GGAGG	MALNYDYRKIDVSSWSKEDHQIAHGFCWTMMAVEMQYVTEENWKEILFRILYLQKIGHGPWTDDQEPKTIIGWLKKLIGYGTNVGEKSRAKWLRHRTNYLASDVENNIEYTFKELELQE*
WOR8_100010495	F007248	AGGAG	MANTTFTGPVVALNGFIGGPNVNASAANDTEQGGKVAFTVFNASTVTIASGQEAGKTLSAVGNTGAFIYVANGFSNAATYAFSNGTTWKRVQDGADIATGA*