Scaffold JGI20128J18817_1002672

Overview

Basic Information

• Taxon OID: 3300001684
• Scaffold ID: JGI20128J18817_1002672
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4528
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F080247	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20128J18817_10026728	F080247	N/A	LIECLIDADINYLNGEPFNTQLRMRGKFLTFGNINIFEKTMPAGLETEQTIQICSPIDATFITYYQGMVAIMSFYFRDSNLYANISLTDPDTIKEFLILSTYYRKYGVNIPNVLDKIMYRKVPT*
JGI20128J18817_10026729	F061983	AGGAGG	LKNYVFKVKVVPIKLFNEEGVLSEQEFEQVKKTGLYKGMKVLEVKDLGYDSFWRNIHYYELIVISEGEGLFDCYYDDVIIVEKLKEVEGIIIKEKDPEPVKVMKKLVASWYQKKLVDEEKAYDVCKKFIM*