NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10080834

Scaffold GBIDBA_10080834


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10080834 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021787Metagenome217N
F024125Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100808341F024125AGAAGGMILAVMKEKIYEITLDRFTGKVLTCDQCSAEDSKENEVREWGNPYDWGVICEECDRHET*
GBIDBA_100808343F021787N/AMRDMITCEEVFEADANAREEFDVVCDEWLNEAILAQDADEDLVECEGCGEQWYRPEGHTGDTVPECQKCYKNDPYYV*

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