Scaffold GBIDBA_10069099

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10069099
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100690992	F071758	GAGG	MSSHTCKRCSIPKYGYTDGTHSIYLCYKCGIYEGVSGGDESFVNDINENPMILLHMIKSKILIPIS*
GBIDBA_100690993	F060433	N/A	MEMFTSVLEPLLLAALIGMGSGLFAFFRKMSNTQRDLCETVQRLQKTLIILAKAVDRQSNRLHPDEANSAFGQIGVNSTINLK*
GBIDBA_100690994	F051547	N/A	MIDPLLIATLSVIGGAILNTFRGFLGSSDATYDIKKFFGALIVAVFAGIAVAQTLSIAGLGIVETVLIGLSIGFSVDYAVSKAKKTQ*