Scaffold GBIDBA_10042370

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10042370
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1788
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037933	Metagenome / Metatranscriptome	167	Y
F044542	Metagenome	154	Y
F063075	Metagenome / Metatranscriptome	130	N
F076504	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100423702	F076504	GGA	MARNWYGDKRLIKEDLYTKKRVAHSDVRGEYWKIFFVILGGYLYFHFIMMGWGI*
GBIDBA_100423703	F044542	GGA	MKHKDYMKLMRTPFEELSEQDQKKRTIEFKRRLETAKTFINGLTKGYINDDIDKLIEDDDPMKDTVELVKLQTNEVGGDA*
GBIDBA_100423707	F037933	GGA	MLDLDWIKDTLKEAIEDENWELIREVVAYLNDDDVFAQYKEDEDWWKGVDDLHL*
GBIDBA_100423709	F063075	N/A	MGLKRYRLMLFDIRVQQRLSMSRTKDSPNLNGDDSLQGLDIDWHLANAEMGYDNFVAPIQDAQPTYAYA*