Scaffold GBIDBA_10038828

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10038828
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2242
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F010477	Metagenome / Metatranscriptome	303	Y
F026028	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100388283	F010477	GGA	MKIYVQIRYMIFVPYLIFIGIMGGNILAESIVVGLALAIYDYLFDDGGGGGRAA*
GBIDBA_100388284	F026028	GAG	MSVCSNCYHRIKHKNAIEVGHLWNTEPFLAVVCSDKCKEEIEILVTSQKKGDGNWMTMRAFPKREEDDGLPKALTDKQFGTT*
GBIDBA_100388286	F007055	GAG	MTVIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESKMLSLYGTQVLDHQDNKPDKDYMKKHRPSHREYPTRLYKNHGGPLVWLTCDIKGRNEGL*