Scaffold GBIDBA_10035210

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10035210
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5915
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F025858	Metagenome / Metatranscriptome	200	Y
F027016	Metagenome / Metatranscriptome	196	Y
F033079	Metagenome	178	Y
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1003521011	F005103	GGA	MKKEEDNEIQIYINKKEMLYSHQNMARAINSFLPYLTNDDLTALGQDILDLFNHREKKEEESKIEVENHSWPYPDTIKQ*
GBIDBA_1003521012	F058211	N/A	MIPIENNSWDYVQGLIEKEINSAFKLRIKEDDKMKFEEDHPYMIKLDEVLKQYSVVKVADGNGAHHGEDYKEMKQVILDALFTNYLGNTIRK*
GBIDBA_100352106	F033079	AGAAG	MKDVPVEIAGNRLVWLHIQRENQRMILDPLGYDAIKDIDEIHSRNRRKTDDPYIRATSEKITHRFPKIDDAER
GBIDBA_100352107	F025858	N/A	GESKMLNNYGIQVLDHQDNKPDKDYMKKHRPPHREYPTRMYKNHGGWMVWLKCDIKGRNKGL*
GBIDBA_100352108	F027016	AGGA	MIELEQEALLLNREMLAEVKNLIDDINEPKPTHLRQFIHPQWGTILGSEKDIRIAALKDEVEIWEQRVEDDPDSIPYLGYIRDTLKSRIEELEGQ*