Scaffold GBIDBA_10029889

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10029889
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3600
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000937	Metagenome	828	Y
F005011	Metagenome / Metatranscriptome	415	Y
F015531	Metagenome	254	N
F016594	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1002988911	F015531	N/A	MKKIESMKKDKEIKAMYKVYKVAFKGKDSFDLYVKNLSEFFRITMDIYISGYTGVPKGCGKGPKGNGEWGRADAIKYWSEKCNIKYKDINKYFYSVDEVSAYS*
GBIDBA_1002988913	F005011	N/A	MKETNRKKETMQETITKYQSKFDRLITSIEKDKILKKMPGNATAGIAVQMIKSLKSYLKANRA*
GBIDBA_100298898	F016594	AGGA	MIKFILLMWLCSGVAHDCKRIVIPYTTFDSYRECSLYGYQHTVDILNKLPKTEIERWRIHTRFSCKAEKTV*
GBIDBA_100298899	F000937	N/A	MVKEIILIILLFNGELSLHSFPFEGTVHECFEYGDKLRIEYAAYNEKRNAWFLNDGIGTWQGFICQ*