Scaffold GBIDBA_10026025

Overview

Basic Information

• Taxon OID: 3300001683
• Scaffold ID: GBIDBA_10026025
• Source Dataset Name: Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2589
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.015833
  • Long. (^o): -111.425
  • Depth (m): 1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F005400	Metagenome / Metatranscriptome	402	Y
F027016	Metagenome / Metatranscriptome	196	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_100260252	F101872	AGGA	MDTLKQIIQDIKVSNSLQGQANIGSLANSFRLSEEDIKILTFASNPIKENVKHEELQFDQNVFKRPDIYEVL*
GBIDBA_100260253	F004843	N/A	MIKWMYVAVVVAVLGFNGCAKDATAKDSAVITPTEKQNETKTNSTSSDTIWIAIVMTWRPVTYLIDKEFSSEVDCWNYYDNGVGESEMRSRYGIQVLDHQDNKPDKDYMKKHRPAHREYPTRIYKNHGGWMVWLTCDIKGRNEGL*
GBIDBA_100260255	F027016	N/A	MEELEEEEALLLNREMLLEVKNLIDDINDTKPSHLRQFMHPQWGSILGSEEDIRLATLKDEVEIWEQRVGKNPDTIPYLGYIRDTLKGRIKELKGL*
GBIDBA_100260259	F005400	GGAGG	MKEMVLVRKMTEMHLQLGKNHKGFKDLTHTNMCYRCDYCDQGFNQIHLLNQLAIEYYICDRCLKYYKLMNSDLKKLRYVENRQEWQDAGWFPSKLFFPYPLGFDT*